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Case Study

Sarah

Autoimmune & Gut Restoration
Chapter Chapter 10
Duration 6 months
Status Resolved
Before A decade of flares.
After Six months to resolution.
The Story

A decade of flares that nobody could explain.

Sarah had spent a decade being told that autoimmune flares were just part of her life. Joint pain, skin breakouts, crushing fatigue, and digestive issues that never fully resolved. She had tried anti-inflammatory diets, multiple practitioners, and a growing list of supplements. Nothing held. The flares kept coming back.

When we ran the Essential Trilogy (blood panel, stool test, and organic acids test), the picture changed completely. Her gut was severely compromised, and the autoimmune response was being driven from the inside out.

The full clinical story Chapter 10 of The Healing Hierarchy Get the Book →
Diagnostics

What we tested. And what we found.

Every protocol in The Healing Hierarchy starts with comprehensive testing. The right tests reveal the actual drivers. Without them, you're treating symptoms.

Tests Used Key Findings
Zonulin
185
Normal range : <107
Severe intestinal permeability.
Calprotectin
285
Normal range : <50
Chronic gut inflammation.
Secretory IgA
142
Healthy range : 510–2040
Gut immune defence collapsed.
Klebsiella, Citrobacter
Severe overgrowth
Should be : low or absent
Pathogenic bacterial bloom.
C-Reactive Protein (CRP)
8.2
Optimal : <1.0
Systemic inflammation.
The Protocol

Sequenced,  not stacked.

The phases are deliberate. Each one prepares the system for the next. Doing them out of order, or all at once, is where most protocols fail.

Phase 1
Repair the Gut Barrier
Weeks 1–12

Gut-healing amino acids and minerals to seal the intestinal lining.

Digestive enzymes to support proper food breakdown.

Phase 2
Clear the Pathogens
Weeks 4–12

Herbal antimicrobials to eliminate bacterial overgrowth.

Spore-based probiotics to crowd out pathogens and restore beneficial flora.

Saccharomyces boulardii for additional probiotic support.

Phase 3
Dietary Reset
30 days + reintroduction

Protocol Whole Food Reset, eliminated gluten, dairy, processed foods, refined sugars, industrial seed oils.

Focus Nutrient-dense whole foods: pastured proteins, colourful vegetables, healthy fats, bone broth, fermented foods.

Reintro Slow reintroduction at week 8 to identify personal trigger foods.

Result Identified gluten and dairy as primary inflammatory triggers, removed long-term.

Phase 4
Rebuild Immune Balance
Ongoing

Methylation and detox pathway support.

Optimise imbalanced minerals and biochemical pathways.

Gut barrier maintenance with continued probiotic rotation.

Duration 6 months

Markers  back to baseline.

The biomarkers tell the story. Every value moved from "abnormal" to "optimal" within six months of the protocol going live.

Zonulin
185 68 Normal ✓
Calprotectin
285 22 Normal ✓
Klebsiella, Citrobacter
Severe Safe levels Cleared ✓
Secretory IgA
142 890 Healthy ✓
CRP
8.2 0.6 Optimal ✓

Autoimmune flares stopped. Joint pain resolved. Skin cleared. Digestion became predictable. Energy returned.

Read the full clinical story

Sarah's case is  Chapter  10.

The reasoning behind every decision, the sequencing logic, the diagnostic interpretation, and the framework these protocols sit inside, all of it is in the book.

Important. This protocol was designed for a specific individual based on their unique test results, medical history, genetics, and clinical context. It is presented here for educational purposes only and should not be replicated without professional guidance.

Every person requires an individualised approach. Work with a qualified practitioner who can assess your situation, interpret your test results, and design a protocol tailored to your needs. Supplement links are provided for reference to the practitioner-grade products used in this case. This information does not constitute medical advice, diagnosis, or treatment.